TTMap-package | Two-Tier Mapper: a clustering tool based on topological data analysis |
calcul_e | Calculation of the value of epsilon |
calcul_e_single | Calculation of the value of epsilon |
control_adjustment | Calculates a corrected control group, discovers outliers in it. |
generate_correlation | Generates different distance matrices |
generate_euclidean | Generates different distance matrices |
generate_mismatch_distance | Generates different distance matrices |
generate_p_val_correlation | Generates different distance matrices |
generate_single_cell_complete_mismatch | Generates different distance matrices |
generate_single_cell_mismatch_with_parameter | Generates different distance matrices |
hyperrectangle_deviation_assessment | Calculation of deviation components |
make_matrices | Prepares the matrices for 'control_adjustment' |
make_matrices-method | Prepares the matrices for 'control_adjustment' |
make_matrices-methods | Prepares the matrices for 'control_adjustment' |
mat2pcl | Reading, writing and annotation files |
read_pcl | Reading, writing and annotation files |
TTMap | Two-Tier Mapper: a clustering tool based on topological data analysis |
ttmap | Visualisation of the clustering |
ttmap_sgn_genes | Gives a list of associated genes per cluster |
ttmap_sgn_genes_inter | Gives a list of associated genes per cluster |
ttmap_sgn_genes_inter2 | Gives a list of associated genes per cluster |
write_pcl | Reading, writing and annotation files |