Infers clonal composition of a tumor


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Documentation for package ‘Clomial’ version 1.44.0

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Clomial-package Fits a binomial model to data from multiple samples of a single tumor to infer its clonal decomposition.
breastCancer Breast cancer data for clonal decomposition.
choose.best Chooses the best trained Clomial model.
Clomial Fits several binomial models to data from multiple samples of a single tumor.
Clomial.generate.data Generates simulated data to test performance of Clomial algorithm.
Clomial.iterate Runs EM iterations until convergence of the Clomial model.
Clomial.likelihood Computes the complete data log-likelihood of a Clomial model.
Clomial1000 Pre-computed results of Clomial.
compute.bic Computes BIC for a Clomial model.
compute.errors Computes the error of a Clomial model.