biocarta | eQTL geneset enrichment query demo data |
check.geneid | check compatibility of gene identifiers between eQTL set and gene set |
coveredGene | loci2pathResult Class |
coveredGene-method | loci2pathResult Class |
description | geneSet Class |
description-method | geneSet Class |
eqtlGene | eqtlSet Class |
eqtlGene-method | eqtlSet Class |
eqtlId | eqtlSet Class |
eqtlId-method | eqtlSet Class |
eqtlRange | eqtlSet Class |
eqtlRange-method | eqtlSet Class |
eqtlSet | eqtlSet Class |
eqtlSet-class | eqtlSet Class |
eset.list | eQTL geneset enrichment query demo data |
geneSet | geneSet Class |
geneSet-class | geneSet Class |
geneSetList | geneSet Class |
geneSetList-method | geneSet Class |
getHeatmap | Generate heatmap of enrichment matrix from query result |
getHeatmap-method | Generate heatmap of enrichment matrix from query result |
getMat | Extract tissue/geneset enrichment matrix from query result |
getMat-method | Extract tissue/geneset enrichment matrix from query result |
getPathDescription | Extract description for enriched pathways from query result and geneSet object |
getPathDescription-method | Extract description for enriched pathways from query result and geneSet object |
getPval | Extract tissue/geneset enrichment p-value distribution from query result |
getPval-method | Extract tissue/geneset enrichment p-value distribution from query result |
getTissueDegree | Extract tissue degree from query result |
getTissueDegree-method | Extract tissue degree from query result |
getWordcloud | Plot word cloud using frequent terms of pathways and genes |
getWordcloud-method | Plot word cloud using frequent terms of pathways and genes |
loci2pathResult | loci2pathResult Class |
loci2pathResult-class | loci2pathResult Class |
numGene | geneSet Class |
numGene-method | geneSet Class |
query | Query enrichment in geneset through multiple eQTL sets. |
query-method | Query enrichment in geneset through multiple eQTL sets. |
query.gr | eQTL geneset enrichment query demo data |
resultTable | loci2pathResult Class |
resultTable-method | loci2pathResult Class |
tissue | eqtlSet Class |
tissue-method | eqtlSet Class |