BadRegionFinder-package | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
Bad Coverage | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
BadRegionFinder | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
Coverage Classifier | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
determine Coverage Quality | Classifies the determined coverage |
determine Quantiles | Determines basewise user-defined quantiles |
determine Regions Of Interest | Determines the regions of interest |
determineCoverage | Determines the coverage (recommended for whole-genome analyses) |
determineCoverageQuality | Classifies the determined coverage |
determineQuantiles | Determines basewise user-defined quantiles |
determineRegionsOfInterest | Determines the regions of interest |
plot Detailed | Plots a more detailed overview of the coverage quality |
plot Summary | Plots a summary of the coverage quality |
plot Summary Genes | Plots a summary of the coverage quality concerning the genes only |
plotDetailed | Plots a more detailed overview of the coverage quality |
plotSummary | Plots a summary of the coverage quality |
plotSummaryGenes | Plots a summary of the coverage quality concerning the genes only |
report Bad Regions Detailed | Gives a detailed report on the coverage quality |
report Bad Regions Genes | Sums up the coverage quality on a gene basis |
report Bad Regions Summary | Sums up the coverage quality |
reportBadRegionsDetailed | Gives a detailed report on the coverage quality |
reportBadRegionsGenes | Sums up the coverage quality on a gene basis |
reportBadRegionsSummary | Sums up the coverage quality |