Annotation and analysis of biological dynamical systems using flow cytometry


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Documentation for package ‘flowTime’ version 1.28.0

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addbs Add background subtraction to a summary data frame
addnorm Normalize fluorescence
annotateFlowSet Annotate a flowSet with experimental metadata
createAnnotation Create an annotation dataframe
dipdoubletGate A gate for the set of all diploid doublets
dipsingletGate A gate for the set of all diploid singlet yeast cells
flsummary Get summary statistics for fluorescence or other data channels of a flowSet
getTime Get the time at which at flowFrame began collection
hapdoubletGate A gate for the set of all haploid doublets
hapsingletGate A gate for the set of all haploid singlets
loadGates Load a yeast gate file
meanMedianSD Summary statistic columns for a flow frame
ploidy Guess the ploidy of a given flowframe
polyGate Create a polygon gate
qaGating Quality assurance check
read.plateSet Read FCS files from set of plates
saveGates Save a yeast gate set
steadyState Analysis of steady state fluorescence flow cytometry
summarizeFlow Generate summary statistics for a flowSet
tidyFlow Generate a tidy dataset from time-course flow cytometry data
yeastGate A gate for the set of all yeast cells