ABneutral |
Run Model with no selection (ABneutral) |
ABneutralSOMA |
Model with no selection (outneutral) |
ABnull |
Run model that considers no accumulation of epimutations (ABnull) |
ABplot |
Plotting estimates |
ABselectMM |
Run model with selection against spontaneous gain of methylation (ABselectMM) |
ABselectMMSOMA |
Model with selection against spontaneous gain of methylation (outselectMM) |
ABselectUU |
Run model with selection against spontaneous loss of methylation (ABselectUU) |
ABselectUUSOMA |
Model with selection against spontaneous loss of methylation (outselectUU) |
BOOTmodel |
Bootstrap analysis with the best model |
buildPedigree |
Building Pedigree |
dMatrix |
Constructing D-Matrices |
FtestRSS |
Comparison of different models and selection of best model |
plotPedigree |
Plot Pedigree |
rc.meth.lvl |
Calculating rc.Meth.lvl |