ChIC package data

Documentation for package ‘ChIC.data’ version 1.22.0

chipSubset	ChIP-seq bam file stored as spp tag-list for a subset of chromosomes for the chip
classesDefList	List with definitions
compendium_db	Histone mark compendium
compendium_db_tf	Transcription factor compendium
compendium_profiles	Metagene profile data for chromatin marks
compendium_profiles_TF	Metagene profile data for transcription factors
dm3_chrom_info	dm3 chromosome information
dm3_refseq_genes_filtered_granges	Filtered RefSeq gene annotation as GRanges for dm3
EM_Results	Example results from the qualityScores_EM() function based on the example ChIP-seq data for the Vignette for ChIC package
hg19_chrom_info	hg19 chromosome information
hg19_refseq_genes_filtered_granges	Filtered RefSeq gene annotation as GRanges
hg38_chrom_info	hg38 chromosome information
hg38_refseq_genes_filtered_granges	Filtered RefSeq gene annotation as GRanges
inputSubset	ChIP-seq bam file stored as spp tag-list for a subset of chromosomes for the input
mm10_chrom_info	mm10 chromosome information
mm10_refseq_genes_filtered_granges	Filtered RefSeq gene annotation as GRanges for mm10
mm9_chrom_info	mm9 chromosome information
mm9_refseq_genes_filtered_granges	Filtered RefSeq gene annotation as GRanges for mm9
rf_models	Random forest models for chromatin marks ChIP-seq experiment classification